Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015796764.1_cds_XP_016451529.1_4521
CDS Infomation

[gene=LOC107776069] [db_xref=GeneID:107776069] [protein=pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like] [protein_id=XP_016451529.1] [location=complement(join(16395..17672,17887..18939))] [gbkey=CDS]
Sequence

ATGATCGCTCTCAGGAAGTTGAACCTCGGGATAGCAGCTTGCCCCTTTTCTTTGCTCCGG
TTGATTGCTGTCAATGGTCATTATGTAGTTTTCAAACACACAATTCAGTCTGGTTGGAGT
AGTGAGTTTGTCAATCGGTTAGGTGGCTTCAGTCGAGGAAACATAGAGATTCAGAGTGGA
GTCGGCTGCACTGCGTTTGCTCAGACTGCTCCATTTTCTACCATTGCTGGGACAATCTTA
GTCCAGGCTCAAGACCTCGGTAAAATGTCTGAGGAGTTAGAAAATGTGATTGATGAAGAT
AAACTTGATGATGCGTGGGTTTTGTATGAGCGGCACATACAAATGGCCGGGTTTCCTAGA
AAATCAATTGTTAATAAACTTGTAGCAGCTTTTGCCGAAAGCTCAGATCTTCGATGGCTG
GAGAAGGCTTATGCTTTGGTTGAACAGGCATTTGAGGAGAACAAGCATGACTTACTTGGA
AGGAATGCTCTTATCTATCTCTCTTTAGTCCTTGCCAAATGCAGATTACCTATTCCCGCA
TCTACTCTTGTAAGGAAGCTTGTGGAAACAGAACAGTATCCACCTGTGAGTGCTTGGTCT
GCAATCCTGGCTTATATGTCACAAACCTCTAATGGAGCGTACCTTGCTGTTGAATTGATT
CTTGAAATAGGTTACTTGTTTCAAGATGGAAGAGTCGATCCCCGTAAAAAGAGCAACGAA
CCTCTACTTTCCATGAAGCCAAATACCACTTGTTTTAACATTGCTTTGGCTGGATGTCTT
CTGTTTGGAACTACTAGAAAAGCAGAGCAGCTCCTTGACATGATGCCTCGAATCAACTTG
AAAGCTGATCCTACCTTACTGATCATAATGGCTCATATTTATGAGAAGAATGGACGAAGG
GAGGAGCTCAAGAAGCTTAAGAGAGACATGGAAGAGGTCCCTAATGTGACTGACATGCAG
TTCCGTCAGTTCTATAATTGTTTGCTTTCGTGCTACTTAAAATTTGGAGATCTTGAATCT
GCATCCCACATGGTTTTAGAAATGCTTCGCAAGGCAGAGAAAGCTAAAAATTCTCTTGGT
GTAGCTAATTTGCTGCTCGAAGCTTCTAGAAGTGGCAATTCATCACTTGCAAATGTTCCC
CTCGATGATGCATTTTATCGAAATCCGAATGGATCAGAAAACTTAGTATCATACGAAGAT
CTCTGTAGAGACAGAAAGTTTTTAAAGCTGCAGATTATTGCTAAAGACTTACTTGATGTC
TTGGTAATTAAGTTGCAGAAGCAAATTGAATTTATTACCAGTGAACGTGGTATTCTCCAG
CCTACTGAGAAATTATACGTTAAATTGGTAAAGGCTTTCTTAGAAGCTGGGAGAACAAAA
GATCTTGCAGAATTTCTAATAAAGGCAGAGAAAGAAGATTCTCCAGTTTCAGTTGATGAT
TCTGCCTTGGTTCATGTGATAAACTCTTGTATTTCACTCGGATGGTTAGATCTGGCACAT
GACCTACTGGATGAAATGCGCTTGGCTGGCGTTAGAACTGGTTCTTCTGTTTATTCGTCT
CTTCTGAAAGCATACTGTAAAGAGAACCGAGCTGGGGAAATTGCTTCTCTTCTTAGAGAT
GCTCGTAAAGCTGGGGTTCAGGTAGATGCAAGCTGTTACAAAGTATTGATCCAGTCCAAG
GCGCTTCAGAAGGACACTCAAGGCGCCCTTGACCTGTTCAAAGAGATGAAGGAGACTAGG
ATACCAAGAACGGGTCATCAAGAATTTGAGAAATTGGTCAAAGGGTCTGCAGAAGGAGGT
GAAGCTAGTTTAATGATGACGCTTTTGCATGAAATCAAGGAAGGACAAAAAGTAGATTAC
GGAGTTCATGATTGGAATAACGTAATTCACTTTTTCTGCAAAAAGAGGTTGTTGCAAGAT
GCTGAAAAGGCTTTTAAGAAGATGAGGAGTTTGGGACATGCTCCAAATGCACAGACTTTT
CATTCTCTGGTCACAGGTTATGCTGCCATTGGTGGAAAGTACGTGGAGGTGACGGAACTA
TGGGGTGAAATGAAGTCTCTTGCTTTTTCTAGTGGAATGAAGTTTGATCAGGAACTGTTA
GATGCTGTGCTTTATACATTTGTTAGAGGTGGTTTCTTTGTTCGAGCAAATGAAGTTGTG
GAGATGATGGATAAAGGTAATATGTTTATTGACAAGTACAAGTACCGTACCCTCTTCTTA
AAGTATCATAAAACACTCTACAAGGGAAAGGCTCCAAAATTCCAGTTAGAAACCCAGATG
AAAAAGAGAGAGGCAGCATTGAACTTTAAGAGATGGGCTGGGTTATGCTGA

Peptide Sequence

PEP ID

XP_016451529.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like [Nicotiana tabacum]
Sequence

MIALRKLNLGIAACPFSLLRLIAVNGHYVVFKHTIQSGWSSEFVNRLGGFSRGNIEIQSG
VGCTAFAQTAPFSTIAGTILVQAQDLGKMSEELENVIDEDKLDDAWVLYERHIQMAGFPR
KSIVNKLVAAFAESSDLRWLEKAYALVEQAFEENKHDLLGRNALIYLSLVLAKCRLPIPA
STLVRKLVETEQYPPVSAWSAILAYMSQTSNGAYLAVELILEIGYLFQDGRVDPRKKSNE
PLLSMKPNTTCFNIALAGCLLFGTTRKAEQLLDMMPRINLKADPTLLIIMAHIYEKNGRR
EELKKLKRDMEEVPNVTDMQFRQFYNCLLSCYLKFGDLESASHMVLEMLRKAEKAKNSLG
VANLLLEASRSGNSSLANVPLDDAFYRNPNGSENLVSYEDLCRDRKFLKLQIIAKDLLDV
LVIKLQKQIEFITSERGILQPTEKLYVKLVKAFLEAGRTKDLAEFLIKAEKEDSPVSVDD
SALVHVINSCISLGWLDLAHDLLDEMRLAGVRTGSSVYSSLLKAYCKENRAGEIASLLRD
ARKAGVQVDASCYKVLIQSKALQKDTQGALDLFKEMKETRIPRTGHQEFEKLVKGSAEGG
EASLMMTLLHEIKEGQKVDYGVHDWNNVIHFFCKKRLLQDAEKAFKKMRSLGHAPNAQTF
HSLVTGYAAIGGKYVEVTELWGEMKSLAFSSGMKFDQELLDAVLYTFVRGGFFVRANEVV
EMMDKGNMFIDKYKYRTLFLKYHKTLYKGKAPKFQLETQMKKREAALNFKRWAGLC

Transcript Sequence

Gene sequence data has not been registered.